{"id":54,"date":"2019-09-12T17:57:09","date_gmt":"2019-09-12T21:57:09","guid":{"rendered":"https:\/\/cecas.clemson.edu\/zhenli\/?page_id=54"},"modified":"2022-07-15T10:49:41","modified_gmt":"2022-07-15T14:49:41","slug":"codes","status":"publish","type":"page","link":"https:\/\/cecas.clemson.edu\/zhenli\/codes\/","title":{"rendered":"Codes"},"content":{"rendered":"\n<hr class=\"new\">\n<p style=\"line-height: 130%\">We are making efforts, with our collaborators together, to develop useful tools and codes for mesh-free methods and multiscale simulations. The following codes have been released to public under the GPLv3 license.<\/p> \n                       <p style=\"line-height: 130%\">You are very welcome to download and use these open source codes. <\/p>\n\n                        <hr class=\"new\">\n                        <h4><a href=\"https:\/\/docs.lammps.org\/Packages_details.html#pkg-dpd-meso\"><font color=\"#00cc00\">DPD-MESO package<\/font><\/a> in LAMMPS:<\/h4>\n                        <p style=\"line-height: 130%\">The DPD-MESO package appends new capabilities to LAMMPS for DPD simulations (beyond the classical DPD model). It includes the many-body DPD (mDPD) model for multiphase problems, the energy-conserving DPD (eDPD) model for non-isothermal dynamics, and the transport DPD (tDPD) for mesoscopic problems involving advection-diffusion-reaction processes.<\/p>\n                        <p style=\"line-height: 400%\"><\/p>\n                        <p> Click <a href=\"https:\/\/lammps.sandia.gov\/tars\/lammps-stable.tar.gz\"><font color=\"#0000ff\">here<\/font><\/a> to download a tarball of <a href=\"https:\/\/lammps.sandia.gov\"><font color=\"#00cc00\">LAMMPS<\/font><\/a>.<\/p>                        \n                        <p style=\"line-height: 400%\"><\/p>\n                        <p> Click <a href=\"https:\/\/docs.lammps.org\/Packages_details.html#pkg-dpd-meso\"><font color=\"#0000ff\">here<\/font><\/a> to read the user documentation of <font color=\"#00cc00\">DPD-MESO package<\/font>.<\/p>                        \n                              \n\n                    <hr class=\"new\">\n                    <h4><a href=\"http:\/\/dx.doi.org\/10.1016\/j.jcp.2015.05.004\"><font color=\"#00cc00\">Multiscale Universal Interface (MUI)<\/font><\/a><\/h4>\n                    <p style=\"line-height: 130%\">MUI is a C++ header-only library that integrates MPI MPMD support and an asynchronous communication protocol to handle inter-solver information exchange and to couple multiple heterogeneous solvers to perform multi-physics and multiscale simulations.<\/p>\n                        <p style=\"line-height: 400%\"><\/p>\n                        <p style=\"line-height: 130%\"> Click <a href=\"https:\/\/cecas.clemson.edu\/zhenli\/wp-content\/uploads\/2019\/10\/mui.tar.gz\"><font color=\"#0000ff\">here<\/font><\/a> to download a tarball of <font color=\"#00cc00\">MUI library<\/font><\/a>.<\/p>\n                        <p style=\"line-height: 130%\"> Click <a href=\"https:\/\/github.com\/MxUI\/MUI-demo\"><font color=\"#0000ff\">here<\/font><\/a> to play with a few <font color=\"#00cc00\">MUI-demo<\/font> examples.<\/p>\n                        <p style=\"line-height: 130%\"> Click <a href=\"https:\/\/cecas.clemson.edu\/zhenli\/wp-content\/uploads\/2019\/10\/mui.pdf\"><font color=\"#0000ff\">here<\/font><\/a> to read the technical details of <font color=\"#00cc00\">MUI<\/font>.<\/p>\n                    \n                    <hr class=\"new\">\n                    <h4>GPU-accelerated particle-based simulator <a href=\"http:\/\/doi.org\/10.1016\/j.cpc.2017.03.016\"><font color=\"#00cc00\">USERMESO-2.0<\/font><\/a> and <a href=\"https:\/\/doi.org\/10.1016\/j.cpc.2019.106874\"><font color=\"#00cc00\">USERMESO-2.5<\/font><\/a><\/h4>\n                    <p style=\"line-height: 130%\">USERMESO-2.0 is a GPU-accelerated extension to LAMMPS that migrates most computation workload onto GPUs and can achieve more than 20 times speedup on a single GPU over 16 CPU cores. For a typical system containing 1,000,000 particles, USERMESO-2.0 allows running 1,000,000 time steps overnight with single GPU.<\/p>\n<p>A new version USERMESO-2.5 includes the many-body DPD model for multi-phase problems and the implementation of arbitrary shape boundaries.<\/p>\n                    <p style=\"line-height: 400%\"><\/p>\n                    <p> Click <a href=\"https:\/\/data.mendeley.com\/datasets\/89849t3ngk\/1\/files\/4e66ba2e-6402-4c32-a9bd-315b135484db\/USERMESO2.0.tar.gz?dl=1\"><font color=\"#0000ff\">here<\/font><\/a> to download a tarball of <font color=\"#00cc00\">USERMESO-2.0<\/font><\/a>.<\/p>\n                    <p> Click <a href=\"https:\/\/cecas.clemson.edu\/zhenli\/wp-content\/uploads\/2019\/10\/usermeso_V2.pdf\"><font color=\"#0000ff\">here<\/font><\/a> to read the technical details of <font color=\"#00cc00\">USERMESO-2.0<\/font>.<\/p>\n                    <p> Click <a href=\"http:\/\/data.mendeley.com\/datasets\/zzpv74bz9m\/1\/files\/00fc3a43-cd85-4e63-b854-84800256c848\/USERMESO.zip?dl=1\"><font color=\"#0000ff\">here<\/font><\/a> to download a tarball of <font color=\"#00cc00\">USERMESO-2.5<\/font><\/a>.<\/p>\n                    <p> Click <a href=\"https:\/\/cecas.clemson.edu\/zhenli\/wp-content\/uploads\/2020\/04\/USERMESO-V2.5.pdf\"><font color=\"#0000ff\">here<\/font><\/a> to read the technical details of <font color=\"#00cc00\">USERMESO-2.5<\/font>.<\/p>\n                    <p> Click <a href=\"https:\/\/cecas.clemson.edu\/zhenli\/wp-content\/uploads\/2020\/04\/arbitrary-shape-boundaries.pdf\"><font color=\"#0000ff\">here<\/font><\/a> to read the technical details of <font color=\"#00cc00\">the arbitrary-shape boundaries in DPD<\/font>.<\/p>\n\n<hr class=\"new\">\n\n\n\n<div id=\"counter\"><a href=\"http:\/\/s11.flagcounter.com\/more\/8gIY\"><img decoding=\"async\" src=\"https:\/\/s11.flagcounter.com\/count2\/8gIY\/bg_3A4958\/txt_FAFAFA\/border_3A4958\/columns_2\/maxflags_8\/viewers_0\/labels_0\/pageviews_1\/flags_0\/percent_0\/\" alt=\"Flag Counter\" border=\"0\"><\/a><\/div>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"<p>We are making efforts, with our collaborators together, to develop useful tools and codes for mesh-free methods and multiscale simulations. The following codes have been released to public under the GPLv3 license. You are very welcome to download and use these open source codes. DPD-MESO package in LAMMPS: The DPD-MESO package appends new capabilities to &hellip; <a href=\"https:\/\/cecas.clemson.edu\/zhenli\/codes\/\" class=\"more-link\">Continue reading <span class=\"screen-reader-text\">Codes<\/span> <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":6,"featured_media":0,"parent":0,"menu_order":5,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-54","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/cecas.clemson.edu\/zhenli\/wp-json\/wp\/v2\/pages\/54","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/cecas.clemson.edu\/zhenli\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/cecas.clemson.edu\/zhenli\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/cecas.clemson.edu\/zhenli\/wp-json\/wp\/v2\/users\/6"}],"replies":[{"embeddable":true,"href":"https:\/\/cecas.clemson.edu\/zhenli\/wp-json\/wp\/v2\/comments?post=54"}],"version-history":[{"count":23,"href":"https:\/\/cecas.clemson.edu\/zhenli\/wp-json\/wp\/v2\/pages\/54\/revisions"}],"predecessor-version":[{"id":1682,"href":"https:\/\/cecas.clemson.edu\/zhenli\/wp-json\/wp\/v2\/pages\/54\/revisions\/1682"}],"wp:attachment":[{"href":"https:\/\/cecas.clemson.edu\/zhenli\/wp-json\/wp\/v2\/media?parent=54"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}